Use the --timeout flag to change the timeout.
--timeout
herbie shell --seed 2019088 (FPCore (x) :name "2isqrt (example 3.6)" :herbie-target (/ 1 (+ (* (+ x 1) (sqrt x)) (* x (sqrt (+ x 1))))) (- (/ 1 (sqrt x)) (/ 1 (sqrt (+ x 1)))))